Full Name
Niranjan Nagarajan
 
 
Email
dcsnn@nus.edu.sg
 

Publications

Results 1-20 of 45 (Search time: 0.017 seconds).

Issue DateTitleAuthor(s)
120092009 swine-origin influenza A (H1N1) resembles previous influenza isolatesKingsford C.; Nagarajan N. ; Salzberg S.L.
22010Alignment and clustering of phylogenetic markers - implications for microbial diversity studiesWhite, J.R; Navlakha, S; Nagarajan, N ; Ghodsi, M; Kingsford, C; Pop, M
32019An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing dataLi, C.; Chng, K.R.; Kwah, J.S.; Av-Shalom, T.V.; Tucker-Kellogg, L.; Nagarajan, N. 
42014BAsE-Seq: a method for obtaining long viral haplotypes from short sequence readsHong, L.Z.; Hong, S.; Wong, H.T.; Aw, P.P.; Cheng, Y.; Wilm, A.; de Sessions, P.F.; Lim, S.G. ; Nagarajan, N. ; Hibberd, M.L. ; Quake, S.R.; Burkholder, W.F.
58-Sep-2021BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome dataLi, Chenhao A.; Av-Shalom, Tamar; Tan, Jun Wei Gerald A.; Kwah, Junmei Samantha; Chng, Kern Rei A.; Nagarajan, Niranjan 
62019Boosting natural history research via metagenomic clean-up of crowdsourced fecesSrivathsan, A. ; Nagarajan, N. ; Meier, R. 
714-Dec-2021CalmBelt: Rapid SARS-CoV-2 Genome Characterization for Outbreak TrackingYingtaweesittikul, Hatairat; Ko, Karrie ; Abdul Rahman, Nurdyana ; Tan, Shireen Yan Ling ; Nagarajan, Niranjan ; Suphavilai, Chayaporn
82017Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in VietnamDay J.N.; Qihui S.; Thanh L.T.; Trieu P.H.; Van A.D.; Thu N.H.; Chau T.T.H.; Lan N.P.H.; Chau N.V.V.; Ashton P.M.; Thwaites G.E.; Boni M.F.; Wolbers M.; Nagarajan N. ; Tan P.B.O. ; Baker S.
91-Apr-2021COVID-19 drug practices risk antimicrobial resistance evolutionAfshinnekoo, Ebrahim; Bhattacharya, Chandrima; Burguete-García, A.; Castro-Nallar, Eduardo; Deng, Youping; Desnues, Christelle; Dias-Neto, Emmanuel; Elhaik, Eran; Iraola, Gregorio; Jang, Soojin; Łabaj, P.P.; Mason, Christopher E.; Nagarajan, Niranjan ; Poulsen, Michael; Prithiviraj, Bharath; Siam, Rania; Shi, Tieliu; Suzuki, Haruo; Werner, Johannes; Mercedes Zambrano, Maria; Bhattacharyya, Malay; MetaSUB Consortium.
102017Development of a genetically programed vanillin-sensing bacterium for high-throughput screening of lignin-degrading enzyme librariesSana, B; Chia, K.H.B; Raghavan, S.S; Ramalingam, B; Nagarajan, N ; Seayad, J; Ghadessy, F.J
112015Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolutionHa Do, L.A; Wilm, A; Van Doorn, H.R; Lam, H.M; Sim, S; Sukumaran, R; Tran, A.T; Nguyen, B.H; Tran, T.T.L; Tran, Q.H; Vo, Q.B; Tran Dac, N.A; Trinh, H.N; Nguyen, T.T.H; Le Binh, B.T; Le, K; Nguyen, M.T; Thai, Q.T; Vo, T.V; Minh Ngo, N.Q; Dang, T.K.H; Cao, N.H; Van Tran, T; Ho, L.V; Farrar, J; De Jong, M; Chen, S ; Nagarajan, N ; Bryant, J.E; Hibberd, M.L 
121-Aug-2022Dominant CarbapenemaseEncoding Plasmids in Clinical Enterobacterales Isolates and Hypervirulent Klebsiella pneumoniae, SingaporeYong, Melvin; Chen, Yahua ; Oo, Guodong ; Chang, Kai Chirng; Chu, Wilson HW ; Teo, Jeanette; Venkatachalam, Indumathi ; Thevasagayam, Natascha May ; Sridatta, Prakki S Rama ; Koh, Vanessa; Marcoleta, Andres E; Chen, Hanrong; Nagarajan, Niranjan ; Kalisvar, Marimuthu ; Ng, Oon Tek ; Gan, Yunn-Hwen 
132014Draft genome sequence of polychlorinated biphenyl-dechlorinating Dehalococcoides mccartyi strain SG1, which carries a circular putative plasmidWang S. ; Chng K.R. ; Wu C. ; Wilm A.; Nagarajan N. ; He J. 
142020Duration of carbapenemase-producing enterobacteriaceae carriage in hospital patientsMo, Y.; Hernandez-Koutoucheva, A.; Musicha, P.; Bertrand, D.; Lye, D. ; Ng, O.; Fenlon, S.N.; Chen, S.L. ; Ling, M.L.; Tang, W.Y.; Barkham, T.; Nagarajan, N. ; Cooper, B.S.; Marimuthu, K. 
1525-Feb-2021Ectopic gut colonization: a metagenomic study of the oral and gut microbiome in Crohn's diseaseHu, Shijia ; Png, Eileen; Gowans, Michelle ; Ong, David EH ; de Sessions, Paola Florez; Song, Jie; Nagarajan, Niranjan 
162016Fast and sensitive mapping of nanopore sequencing reads with GraphMapSovi?, I; Šiki?, M; Wilm, A; Fenlon, S.N; Chen, S ; Nagarajan, N 
172010Finishing genomes with limited resources: Lessons from an ensemble of microbial genomesNagarajan, N ; Cook, C; Di Bonaventura, M; Ge, H; Richards, A; Bishop-Lilly, K.A; DeSalle, R; Read, T.D; Pop, M
182013Genome sequencing of four strains of Rickettsia prowazekii, the causative agent of epidemic typhus, including one flying squirrel isolateBishop-Lilly, K.A; Ge, H; Butani, A; Osborne, B; Verratti, K; Mokashi, V; Nagarajan, N ; Pop, M; Read, T.D; Richards, A.L
1913-Oct-2022Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast AsiansGounot, Jean-Sebastien; Chia, Minghao; Bertrand, Denis; Saw, Woei-Yuh ; Ravikrishnan, Aarthi; Low, Adrian ; Ding, Yichen; Amanda, Ng Hui Qi; Tan, Linda Wei Lin ; Teo, Yik-Ying ; Seedorf, Henning ; Nagarajan, Niranjan 
202018Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotesTapsin, S; Sun, M; Shen, Y; Zhang, H; Lim, X.N ; Susanto, T.T; Yang, S.L; Zeng, G.S; Lee, J; Lezhava, A; Ang, E.L; Zhang, L.H; Wang, Y ; Zhao, H; Nagarajan, N ; Wan, Y