Please use this identifier to cite or link to this item: https://doi.org/10.2807/1560-7917.ES.2020.25.32.2001410
Title: Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Authors: Alm, E.
Broberg, E.K.
Connor, T.
Hodcroft, E.B.
Komissarov, A.B.
Maurer-Stroh, S. 
Melidou, A.
Neher, R.A.
O'Toole, Á.
Pereyaslov, D.
Beerenwinkel, N.
Posada-Céspedes, S.
Jablonski, K.P.
Ferreira, P.F.
Topolsky, I.
Avši?-Županc, T.
Korva, M.
Poljak, M.
Zakotnik, S.
Zorec, T.M.
Bragstad, K.
Hungnes, O.
Stene-Johansen, K.
Reusken, C.
Meijer, A.
Vennema, H.
Ruiz-Roldán, L.
Bracho, M.A.
García-González, N.
Chiner-Oms, Á.
Cancino-Muñoz, I.
Comas, I.
Goig, G.A.
Torres-Puente, M.
López, M.G.
Martínez-Priego, L.
D'Auria, G.
Ruíz-Hueso, P.
Ferrús-Abad, L.
de Marco, G.
Galan-Vendrell, I.
Carbó-Ramirez, S.
Ruiz-Rodriguez, P.
Coscollá, M.
Polackova, K.
Kramna, L.
Cinek, O.
Richter, J.
Krashias, G.
Tryfonos, C.
Bashiardes, S.
Koptides, D.
Christodoulou, C.
Bartolini, B.
Gruber, C.E.
Di Caro, A.
Castilletti, C.
Stefani, F.
Rimoldi, S.G.
Romeri, F.
Salerno, F.
Polesello, S.
Nagy, A.
Jirincova, H.
Vecerova, J.
Novakova, L.
Cordey, S.
Murtskhvaladze, M.
Kotaria, N.
Schär, T.
Beisel, C.
Vugrek, O.
Roki?, F.
Trgovec-Greif, L.
Jurak, I.
Rukavina, T.
Su?i?, N.
Schønning, K.
Karst, S.M.
Kirkegaard, R.H.
Michaelsen, T.Y.
Sørensen, E.A.
Knutson, S.
Brandt, J.
Le-Quy, V.
Sørensen, T.
Petersen, C.
Pedersen, M.S.
Larsen, S.L.
Skov, M.N.
Rasmussen, M.
Fonager, J.
Fomsgaard, A.
Maksyutov, R.A.
Gavrilova, E.V.
Pyankov, O.V.
Bodnev, S.A.
Tregubchak, T.V.
Shvalov, A.N.
Antonets, D.V.
Resende, P.C.
Goya, S.
Perrin, A.
Lee, R.T.
Yadahalli, S.
Han, A.X.
Russell, C.A.
Schmutz, S.
Zaheri, M.
Kufner, V.
Huber, M.
Trkola, A.
Antwerpen, M.
Walter, M.C.
van der Werf, S.
Gambaro, F.
Behillil, S.
Enouf, V.
Donati, F.
Ustinova, M.
Rovite, V.
Klovins, J.
Savicka, O.
Wienecke-Baldacchino, A.K.
Ragimbeau, C.
Fournier, G.
Mossong, J.
Aberle, S.W.
Haukland, M.
Enkirch, T.
Advani, A.
Karlberg, M.L.
Lindsjö, O.K.
Broddesson, S.
Sláviková, M.
Li?ková, M.
Klempa, B.
Staro?ová, E.
Tichá, E.
Szemes, T.
Rus?áková, D.
Stadler, T.
Quer, J.
Anton, A.
Andres, C.
Piñana, M.
Garcia-Cehic, D.
Pumarola, T.
Izopet, J.
Gioula, G.
Exindari, M.
Papa, A.
Chatzidimitriou, D.
Metallidis, S.
Pappa, S.
Macek, M.
Geryk, J.
Brož, P.
Briksí, A.
Hubá?ek, P.
D?evínek, P.
Zajac, M.
Kvapil, P.
Holub, M.
Kvapilová, K.
Novotný, A.
Kašný, M.
Klempt, P.
Vapalahti, O.
Smura, T.
Sironen, T.
Selhorst, P.
Anthony, C.
Ariën, K.
Simon-Loriere, E.
Rabalski, L.
Bienkowska-Szewczyk, K.
Borges, V.
Isidro, J.
Gomes, J.P.
Guiomar, R.
Pechirra, P.
Costa, I.
Duarte, S.
Vieira, L.
Pyrc, K.
Zuckerman, N.S.
Turdikulova, S.
Abdullaev, A.
Dalimova, D.
Abdurakhimov, A.
Tagliabracci, A.
Alessandrini, F.
Melchionda, F.
Onofri, V.
Turchi, C.
Bagnarelli, P.
Menzo, S.
Caucci, S.
Di Sante, L.
Popa, A.
Genger, J.-W.
Agerer, B.
Lercher, A.
Endler, L.
Smyth, M.
Penz, T.
Schuster, M.
Senekowitsch, M.
Laine, J.
Bock, C.
Bergthaler, A.
Shevtsov, A.
Kalendar, R.
Ramanculov, Y.
Graf, A.
Muenchhoff, M.
Keppler, O.T.
Krebs, S.
Blum, H.
Marcello, A.
Licastro, D.
D'Agaro, P.
Laubscher, F.
Vidanovic, D.
Tesovic, B.
Volkening, J.
Clementi, N.
Mancini, N.
Rupnik, M.
Mahnic, A.
Walker, A.
Houwaart, T.
Wienemann, T.
Vasconcelos, M.K.
Strelow, D.
Jensen, B.-E.O.
Senff, T.
Hülse, L.
Adams, O.
Andree, M.
Hauka, S.
Feldt, T.
Keitel, V.
Kindgen-Milles, D.
Timm, J.
Pfeffer, K.
Dilthey, A.T.
Moore, C.
Ozdarendeli, A.
Pavel, S.T.I.
Yetiskin, H.
Aydin, G.
Holyavkin, C.
Uygut, M.A.
Cevik, C.
Shchetinin, A.
Gushchin, V.
Dinler-Doganay, G.
Doganay, L.
Kizilboga-Akgun, T.
Karacan, I.
Pancer, K.
Maes, P.
Martí-Carreras, J.
Wawina-Bokalanga, T.
Vanmechelen, B.
Thürmer, A.
Wedde, M.
Dürrwald, R.
von Kleist, M.
Drechsel, O.
Wolff, T.
Fuchs, S.
Kmiecinski, R.
Michel, J.
Nitsche, A.
Casas, I.
Caballero, M.I.
Zaballos, Á.
Jiménez, P.
Jiménez, M.
Fernández, S.M.
Fernández, S.V.
de la Plaza, I.C.
Fadeev, A.
Ivanova, A.
Sergeeva, M.
Stefanelli, P.
Estee Torok, M.
Hall, G.
da Silva Filipe, A.
Turtle, L.
Afifi, S.
McCluggage, K.
Beer, R.
Ledesma, J.
Maksimovic, J.
Spellman, K.
Hamilton, W.L.
Marchbank, A.
Southgate, J.A.
Underwood, A.
Taylor, B.
Yeats, C.
Abudahab, K.
Gemmell, M.R.
Eccles, R.
Lucaci, A.
Nelson, C.A.
Rainbow, L.
Whitehead, M.
Gregory, R.
Haldenby, S.
Paterson, S.
Hughes, M.A.
Curran, M.D.
Baker, D.
Tucker, R.
Green, L.R.
Feltwell, T.
Halstead, F.D.
Wyles, M.
Jahun, A.S.
Ahmad, S.S.Y.
Georgana, I.
Goodfellow, I.
Yakovleva, A.
Meredith, L.W.
Gavriil, A.
Awan, A.R.
Fisher, C.
Edgeworth, J.
Lynch, J.
Moore, N.
Williams, R.
Kidd, S.P.
Cortes, N.
Brunker, K.
McCrone, J.T.
Quick, J.
Duckworth, N.
Walsh, S.
Sloan, T.
Ludden, C.
George, R.P.
Eltringham, G.
Brown, J.R.
Aranday-Cortes, E.
Shepherd, J.G.
Hughes, J.
Li, K.K.
Williams, T.C.
Johnson, N.
Jesudason, N.
Mair, D.
Thomson, E.
Shah, R.
Parr, Y.A.
Carmichael, S.
Robertson, D.L.
Nomikou, K.
Broos, A.
Niebel, M.
Smollett, K.
Tong, L.
Miah, S.
Wittner, A.
Phillips, N.
Payne, B.
Dewar, R.
Holmes, A.
Bolt, F.
Price, J.R.
Mookerjee, S.
Sethi, D.K.
Potter, W.
Stanley, R.
Prakash, R.
Dervisevic, S.
Graham, J.C.
Nelson, A.
Smith, D.
Young, G.R.
Yew, W.C.
Todd, J.A.
Trebes, A.
Andersson, M.
Bull, M.
Watkins, J.
Birchley, A.
Gatica-Wilcox, B.
Gilbert, L.
Kumžiene-Summerhayes, S.
Rey, S.
Chauhan, A.
Butcher, E.
Bicknell, K.
Elliott, S.
Glaysher, S.
Lackenby, A.
Bibby, D.
Platt, S.
Mohamed, H.
Machin, N.W.
Mbisa, J.L.
Evans, J.
Perry, M.
Pacchiarini, N.
Corden, S.
Adams, A.G.
Gaskin, A.
Coombs, J.
Graham, L.J.
Cottrell, S.
Morgan, M.
Gifford, L.
Kolyva, A.
Rudder, S.J.
Trotter, A.J.
Mather, A.E.
Aydin, A.
Page, A.J.
Kay, G.L.
de Oliveira Martins, L.
Yasir, M.
Alikhan, N.-F.
Thomson, N.M.
Gilroy, R.
Kingsley, R.A.
O'Grady, J.
Gutierrez, A.V.
Diaz, M.
Viet, T.L.
Tedim, A.P.
Adriaenssens, E.M.
Patrick Mcclure, C.
Moore, C.
Sang, F.
Clark, G.
Howson-Wells, H.C.
Debebe, J.
Ball, J.
Chappell, J.
Khakh, M.
Carlile, M.
Loose, M.
Lister, M.M.
Holmes, N.
Tsoleridis, T.
Fleming, V.M.
Wright, V.
Smith, W.
Gallagher, M.D.
Parker, M.
Partridge, D.G.
Evans, C.
Baker, P.
Essex, S.
Liggett, S.
Keeley, A.J.
Bashton, M.
Rooke, S.
Dervisavic, S.
Meader, E.J.
Lopez, C.E.B.
Angyal, A.
Kristiansen, M.
Tutill, H.J.
Findlay, J.
Mestek-Boukhibar, L.
Forrest, L.
Dyal, P.
Williams, R.J.
Panchbhaya, Y.
Williams, C.A.
Roy, S.
Pandey, S.
Stockton, J.
Loman, N.J.
Poplawski, R.
Nicholls, S.
Rowe, W.P.M.
Khokhar, F.
Pinckert, M.L.
Hosmillo, M.
Chaudhry, Y.
Caller, L.G.
Davidson, R.K.
Griffith, L.
Rambaut, A.
Jackson, B.
Colquhoun, R.
Hill, V.
Nichols, J.
Asamaphan, P.
Darby, A.
Jackson, K.A.
Iturriza-Gomara, M.
Vamos, E.E.
Green, A.
Aanensen, D.
Bonsall, D.
Buck, D.
Macintyre-Cockett, G.
de Cesare, M.
Pybus, O.
Golubchik, T.
Scarlett, G.
Loveson, K.F.
Robson, S.C.
Beckett, A.
Lindsey, B.
Groves, D.C.
Parsons, P.J.
McHugh, M.P.
Barnes, J.D.
Manso, C.F.
Grammatopoulos, D.
Menger, K.E.
Harrison, E.
Gunson, R.
Peacock, S.J.
Gonzalez, G.
Carr, M.
Mihaela, L.
Popovici, O.
Brytting, M.
Bresner, C.
Fuller, W.
Workman, T.
Mentis, A.F.
Kossyvakis, A.
Karamitros, T.
Pogka, V.
Kalliaropoulos, A.
Horefti, E.
Kontou, A.
Martinez-Gonzalez, B.
Labropoulou, V.
Voulgari-Kokota, A.
Evangelidou, M.
Bizta, P.
Belimezi, M.
Lambrechts, L.
Doymaz, M.Z.
Yazici, M.K.
Cetin, N.S.
Karaaslan, E.
Kallio-Kokko, H.
Virtanen, J.
Suvanto, M.
Nguyen, P.T.
Ellonen, P.
Hannula, S.
Kangas, H.
Sreenu, V.B.
Burián, K.
Terhes, G.
Gombos, K.
Gyenesei, A.
Urbán, P.
Herczeg, R.
Jakab, F.
Kemenesi, G.
Tóth, G.E.
Somogyi, B.
Zana, B.
Zeghbib, S.
Kuczmog, A.
Földes, F.
Lanszki, Z.
Madai, M.
Papp, H.
Nagy, Á.
Pereszlényi, C.I.
Babinszky, G.C.
Dudás, G.
Csoma, E.
Abou Tayoun, A.N.
Alsheikh-Ali, A.A.
Loney, T.
Nowotny, N.
Abdul-Wahab, O.
Gonzalez-Candelas, F.
Andersen, M.H.
Taylor, S.
The WHO European Region sequencing laboratories and GISAID EpiCoV group.
Issue Date: 2020
Publisher: European Centre for Disease Prevention and Control (ECDC)
Citation: Alm, E., Broberg, E.K., Connor, T., Hodcroft, E.B., Komissarov, A.B., Maurer-Stroh, S., Melidou, A., Neher, R.A., O'Toole, Á., Pereyaslov, D., Beerenwinkel, N., Posada-Céspedes, S., Jablonski, K.P., Ferreira, P.F., Topolsky, I., Avši?-Županc, T., Korva, M., Poljak, M., Zakotnik, S., Zorec, T.M., Bragstad, K., Hungnes, O., Stene-Johansen, K., Reusken, C., Meijer, A., Vennema, H., Ruiz-Roldán, L., Bracho, M.A., García-González, N., Chiner-Oms, Á., Cancino-Muñoz, I., Comas, I., Goig, G.A., Torres-Puente, M., López, M.G., Martínez-Priego, L., D'Auria, G., Ruíz-Hueso, P., Ferrús-Abad, L., de Marco, G., Galan-Vendrell, I., Carbó-Ramirez, S., Ruiz-Rodriguez, P., Coscollá, M., Polackova, K., Kramna, L., Cinek, O., Richter, J., Krashias, G., Tryfonos, C., Bashiardes, S., Koptides, D., Christodoulou, C., Bartolini, B., Gruber, C.E., Di Caro, A., Castilletti, C., Stefani, F., Rimoldi, S.G., Romeri, F., Salerno, F., Polesello, S., Nagy, A., Jirincova, H., Vecerova, J., Novakova, L., Cordey, S., Murtskhvaladze, M., Kotaria, N., Schär, T., Beisel, C., Vugrek, O., Roki?, F., Trgovec-Greif, L., Jurak, I., Rukavina, T., Su?i?, N., Schønning, K., Karst, S.M., Kirkegaard, R.H., Michaelsen, T.Y., Sørensen, E.A., Knutson, S., Brandt, J., Le-Quy, V., Sørensen, T., Petersen, C., Pedersen, M.S., Larsen, S.L., Skov, M.N., Rasmussen, M., Fonager, J., Fomsgaard, A., Maksyutov, R.A., Gavrilova, E.V., Pyankov, O.V., Bodnev, S.A., Tregubchak, T.V., Shvalov, A.N., Antonets, D.V., Resende, P.C., Goya, S., Perrin, A., Lee, R.T., Yadahalli, S., Han, A.X., Russell, C.A., Schmutz, S., Zaheri, M., Kufner, V., Huber, M., Trkola, A., Antwerpen, M., Walter, M.C., van der Werf, S., Gambaro, F., Behillil, S., Enouf, V., Donati, F., Ustinova, M., Rovite, V., Klovins, J., Savicka, O., Wienecke-Baldacchino, A.K., Ragimbeau, C., Fournier, G., Mossong, J., Aberle, S.W., Haukland, M., Enkirch, T., Advani, A., Karlberg, M.L., Lindsjö, O.K., Broddesson, S., Sláviková, M., Li?ková, M., Klempa, B., Staro?ová, E., Tichá, E., Szemes, T., Rus?áková, D., Stadler, T., Quer, J., Anton, A., Andres, C., Piñana, M., Garcia-Cehic, D., Pumarola, T., Izopet, J., Gioula, G., Exindari, M., Papa, A., Chatzidimitriou, D., Metallidis, S., Pappa, S., Macek, M., Geryk, J., Brož, P., Briksí, A., Hubá?ek, P., D?evínek, P., Zajac, M., Kvapil, P., Holub, M., Kvapilová, K., Novotný, A., Kašný, M., Klempt, P., Vapalahti, O., Smura, T., Sironen, T., Selhorst, P., Anthony, C., Ariën, K., Simon-Loriere, E., Rabalski, L., Bienkowska-Szewczyk, K., Borges, V., Isidro, J., Gomes, J.P., Guiomar, R., Pechirra, P., Costa, I., Duarte, S., Vieira, L., Pyrc, K., Zuckerman, N.S., Turdikulova, S., Abdullaev, A., Dalimova, D., Abdurakhimov, A., Tagliabracci, A., Alessandrini, F., Melchionda, F., Onofri, V., Turchi, C., Bagnarelli, P., Menzo, S., Caucci, S., Di Sante, L., Popa, A., Genger, J.-W., Agerer, B., Lercher, A., Endler, L., Smyth, M., Penz, T., Schuster, M., Senekowitsch, M., Laine, J., Bock, C., Bergthaler, A., Shevtsov, A., Kalendar, R., Ramanculov, Y., Graf, A., Muenchhoff, M., Keppler, O.T., Krebs, S., Blum, H., Marcello, A., Licastro, D., D'Agaro, P., Laubscher, F., Vidanovic, D., Tesovic, B., Volkening, J., Clementi, N., Mancini, N., Rupnik, M., Mahnic, A., Walker, A., Houwaart, T., Wienemann, T., Vasconcelos, M.K., Strelow, D., Jensen, B.-E.O., Senff, T., Hülse, L., Adams, O., Andree, M., Hauka, S., Feldt, T., Keitel, V., Kindgen-Milles, D., Timm, J., Pfeffer, K., Dilthey, A.T., Moore, C., Ozdarendeli, A., Pavel, S.T.I., Yetiskin, H., Aydin, G., Holyavkin, C., Uygut, M.A., Cevik, C., Shchetinin, A., Gushchin, V., Dinler-Doganay, G., Doganay, L., Kizilboga-Akgun, T., Karacan, I., Pancer, K., Maes, P., Martí-Carreras, J., Wawina-Bokalanga, T., Vanmechelen, B., Thürmer, A., Wedde, M., Dürrwald, R., von Kleist, M., Drechsel, O., Wolff, T., Fuchs, S., Kmiecinski, R., Michel, J., Nitsche, A., Casas, I., Caballero, M.I., Zaballos, Á., Jiménez, P., Jiménez, M., Fernández, S.M., Fernández, S.V., de la Plaza, I.C., Fadeev, A., Ivanova, A., Sergeeva, M., Stefanelli, P., Estee Torok, M., Hall, G., da Silva Filipe, A., Turtle, L., Afifi, S., McCluggage, K., Beer, R., Ledesma, J., Maksimovic, J., Spellman, K., Hamilton, W.L., Marchbank, A., Southgate, J.A., Underwood, A., Taylor, B., Yeats, C., Abudahab, K., Gemmell, M.R., Eccles, R., Lucaci, A., Nelson, C.A., Rainbow, L., Whitehead, M., Gregory, R., Haldenby, S., Paterson, S., Hughes, M.A., Curran, M.D., Baker, D., Tucker, R., Green, L.R., Feltwell, T., Halstead, F.D., Wyles, M., Jahun, A.S., Ahmad, S.S.Y., Georgana, I., Goodfellow, I., Yakovleva, A., Meredith, L.W., Gavriil, A., Awan, A.R., Fisher, C., Edgeworth, J., Lynch, J., Moore, N., Williams, R., Kidd, S.P., Cortes, N., Brunker, K., McCrone, J.T., Quick, J., Duckworth, N., Walsh, S., Sloan, T., Ludden, C., George, R.P., Eltringham, G., Brown, J.R., Aranday-Cortes, E., Shepherd, J.G., Hughes, J., Li, K.K., Williams, T.C., Johnson, N., Jesudason, N., Mair, D., Thomson, E., Shah, R., Parr, Y.A., Carmichael, S., Robertson, D.L., Nomikou, K., Broos, A., Niebel, M., Smollett, K., Tong, L., Miah, S., Wittner, A., Phillips, N., Payne, B., Dewar, R., Holmes, A., Bolt, F., Price, J.R., Mookerjee, S., Sethi, D.K., Potter, W., Stanley, R., Prakash, R., Dervisevic, S., Graham, J.C., Nelson, A., Smith, D., Young, G.R., Yew, W.C., Todd, J.A., Trebes, A., Andersson, M., Bull, M., Watkins, J., Birchley, A., Gatica-Wilcox, B., Gilbert, L., Kumžiene-Summerhayes, S., Rey, S., Chauhan, A., Butcher, E., Bicknell, K., Elliott, S., Glaysher, S., Lackenby, A., Bibby, D., Platt, S., Mohamed, H., Machin, N.W., Mbisa, J.L., Evans, J., Perry, M., Pacchiarini, N., Corden, S., Adams, A.G., Gaskin, A., Coombs, J., Graham, L.J., Cottrell, S., Morgan, M., Gifford, L., Kolyva, A., Rudder, S.J., Trotter, A.J., Mather, A.E., Aydin, A., Page, A.J., Kay, G.L., de Oliveira Martins, L., Yasir, M., Alikhan, N.-F., Thomson, N.M., Gilroy, R., Kingsley, R.A., O'Grady, J., Gutierrez, A.V., Diaz, 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Dudás, G., Csoma, E., Abou Tayoun, A.N., Alsheikh-Ali, A.A., Loney, T., Nowotny, N., Abdul-Wahab, O., Gonzalez-Candelas, F., Andersen, M.H., Taylor, S., The WHO European Region sequencing laboratories and GISAID EpiCoV group. (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance 25 (32) : 2001410. ScholarBank@NUS Repository. https://doi.org/10.2807/1560-7917.ES.2020.25.32.2001410
Rights: Attribution 4.0 International
Abstract: We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2. © 2020 Turkish Society of Cardiology. All rights reserved.
Source Title: Eurosurveillance
URI: https://scholarbank.nus.edu.sg/handle/10635/197949
ISSN: 1025-496X
DOI: 10.2807/1560-7917.ES.2020.25.32.2001410
Rights: Attribution 4.0 International
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