Please use this identifier to cite or link to this item: https://doi.org/10.1186/s40793-017-0247-1
Title: Genomics insights into production of 2-methylisoborneol and a putative cyanobactin by Planktothricoides sp. SR001
Authors: Te S.H. 
Tan B.F.
Boo C.Y. 
Thompson J.R.
Gin K.Y.-H. 
Keywords: 2 methylisoborneol
contig
cyanobactin
RNA 16S
tripeptide
unclassified drug
Article
bacterial gene
bacterial genome
bacterial overgrowth
bacterium examination
bioinformatics
clustered regularly interspaced short palindromic repeat
cyanobacterium
DNA base composition
gene function
genome analysis
genome size
molecular genetics
nonhuman
Planktothricoides
pseudogene
RNA gene
RNA sequence
sequence alignment
Issue Date: 2017
Citation: Te S.H., Tan B.F., Boo C.Y., Thompson J.R., Gin K.Y.-H. (2017). Genomics insights into production of 2-methylisoborneol and a putative cyanobactin by Planktothricoides sp. SR001. Standards in Genomic Sciences 12 (1) : 35. ScholarBank@NUS Repository. https://doi.org/10.1186/s40793-017-0247-1
Abstract: Planktothricoides is a free-living filamentous cyanobacterium belonging to the order Oscillatoriales and the family Phormidiaceae, capable of forming bloom in fresh and brackish waters. A unicyanobacterial non-axenic culture dominated by Planktothricoides sp. SR001 was obtained from a freshwater reservoir in Singapore. The draft genome presented here is the first tropical freshwater Planktothricoides sp. ever sequenced. The genome of 7.0Mbp contains 5,776 genes predicted using the JGI IMG pipeline. The whole genome sequence allows identification of genes encoding for nitrogen-fixation, accessory photosynthetic pigments and biosynthesis of an off-flavor compound, 2-methylisoborneol, which has been experimentally verified here based on metabolite detection. In addition, strain SR001 genome contains an operon putatively involved in the production of a linear tripeptide cyanobactin related to viridisamide A and aeruginosamide, with the later known to possess anti-microbial or cytotoxic effect. © 2017 The Author(s).
Source Title: Standards in Genomic Sciences
URI: https://scholarbank.nus.edu.sg/handle/10635/173786
ISSN: 19443277
DOI: 10.1186/s40793-017-0247-1
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