Please use this identifier to cite or link to this item: https://scholarbank.nus.edu.sg/handle/10635/41501
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dc.titleA better gap penalty for Pairwise SVM
dc.contributor.authorChua, H.N.
dc.contributor.authorSung, W.-K.
dc.date.accessioned2013-07-04T08:29:01Z
dc.date.available2013-07-04T08:29:01Z
dc.date.issued2005
dc.identifier.citationChua, H.N.,Sung, W.-K. (2005). A better gap penalty for Pairwise SVM. Series on Advances in Bioinformatics and Computational Biology 1 : 11-20. ScholarBank@NUS Repository.
dc.identifier.isbn1860944779
dc.identifier.issn17516404
dc.identifier.urihttp://scholarbank.nus.edu.sg/handle/10635/41501
dc.description.abstractSVM-Pairwise was a major breakthrough in remote homology detection techniques, significantly outperforming previous approaches. This approach has been extensively evaluated and cited by later works, and is frequently taken as a benchmark. No known work however, has examined the gap penalty model employed by SVM-Pairwise. In this paper, we study in depth the relevance and effectiveness of SVM-Pairwise's gap penalty model with respect to the homology detection task. We have identified some limitations in this model that prevented the SVM-Pairwise algorithm from realizing its full potential and also studied several ways to overcome them. We discovered a more appropriate gap penalty model that significantly improves the performance of SVM-Pairwise.
dc.sourceScopus
dc.typeConference Paper
dc.contributor.departmentCOMPUTER SCIENCE
dc.description.sourcetitleSeries on Advances in Bioinformatics and Computational Biology
dc.description.volume1
dc.description.page11-20
dc.identifier.isiutNOT_IN_WOS
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