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|Title:||Fast relative Lempel-Ziv self-index for similar sequences|
|Citation:||Do, H.H.,Jansson, J.,Sadakane, K.,Sung, W.-K. (2012). Fast relative Lempel-Ziv self-index for similar sequences. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7285 LNCS : 291-302. ScholarBank@NUS Repository. https://doi.org/10.1007/978-3-642-29700-7_27|
|Abstract:||Recent advances in biotechnology and web technology are generating huge collections of similar strings. People now face the problem of storing them compactly while supporting fast pattern searching. One compression scheme called relative Lempel-Ziv compression uses textual substitutions from a reference text as follows: Given a (large) set S of strings, represent each string in S as a concatenation of substrings from a reference string R. This basic scheme gives a good compression ratio when every string in S is similar to R, but does not provide any pattern searching functionality. Here, we describe a new data structure that supports fast pattern searching. © 2012 Springer-Verlag.|
|Source Title:||Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|
|Appears in Collections:||Staff Publications|
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