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Title: Multilocus sequence analysis of Treponema denticola strains of diverse origin
Authors: Mo, S.
You, M.
Su, Y.C. 
Lacap-Bugler, D.C.
Huo, Y.-B.
Smith, G.J. 
Leung, W.K.
Watt, R.M.
Keywords: Dentistry
Infectious diseases
Multilocus sequence analysis
Oral microbiota
Periodontal disease
Treponema denticola
Issue Date: 2013
Source: Mo, S., You, M., Su, Y.C., Lacap-Bugler, D.C., Huo, Y.-B., Smith, G.J., Leung, W.K., Watt, R.M. (2013). Multilocus sequence analysis of Treponema denticola strains of diverse origin. BMC Microbiology 13 (1) : -. ScholarBank@NUS Repository.
Abstract: Background: The oral spirochete bacterium Treponema denticola is associated with both the incidence and severity of periodontal disease. Although the biological or phenotypic properties of a significant number of T. denticola isolates have been reported in the literature, their genetic diversity or phylogeny has never been systematically investigated. Here, we describe a multilocus sequence analysis (MLSA) of 20 of the most highly studied reference strains and clinical isolates of T. denticola; which were originally isolated from subgingival plaque samples taken from subjects from China, Japan, the Netherlands, Canada and the USA. Results: The sequences of the 16S ribosomal RNA gene, and 7 conserved protein-encoding genes (flaA, recA, pyrH, ppnK, dnaN, era and radC) were successfully determined for each strain. Sequence data was analyzed using a variety of bioinformatic and phylogenetic software tools. We found no evidence of positive selection or DNA recombination within the protein-encoding genes, where levels of intraspecific sequence polymorphism varied from 18.8% (flaA) to 8.9% (dnaN). Phylogenetic analysis of the concatenated protein-encoding gene sequence data (ca. 6,513 nucleotides for each strain) using Bayesian and maximum likelihood approaches indicated that the T. denticola strains were monophyletic, and formed 6 well-defined clades. All analyzed T. denticola strains appeared to have a genetic origin distinct from that of 'Treponema vincentii' or Treponema pallidum. No specific geographical relationships could be established; but several strains isolated from different continents appear to be closely related at the genetic level. Conclusions: Our analyses indicate that previous biological and biophysical investigations have predominantly focused on a subset of T. denticola strains with a relatively narrow range of genetic diversity. Our methodology and results establish a genetic framework for the discrimination and phylogenetic analysis of T. denticola isolates, which will greatly assist future biological and epidemiological investigations involving this putative 'periodontopathogen'. © 2013 Mo et al.; licensee BioMed Central Ltd.
Source Title: BMC Microbiology
ISSN: 14712180
DOI: 10.1186/1471-2180-13-24
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