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https://scholarbank.nus.edu.sg/handle/10635/150284
DC Field | Value | |
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dc.title | IDENTIFYING UNIVERSAL TELEOST BIOMARKERS FOR ENVIRONMENTAL POLLUTANTS THROUGH COMPARATIVE TRANSCRIPTOMICS | |
dc.contributor.author | IRA AGRAWAL | |
dc.date.accessioned | 2018-12-28T18:00:19Z | |
dc.date.available | 2018-12-28T18:00:19Z | |
dc.date.issued | 2018-09-28 | |
dc.identifier.citation | IRA AGRAWAL (2018-09-28). IDENTIFYING UNIVERSAL TELEOST BIOMARKERS FOR ENVIRONMENTAL POLLUTANTS THROUGH COMPARATIVE TRANSCRIPTOMICS. ScholarBank@NUS Repository. | |
dc.identifier.uri | http://scholarbank.nus.edu.sg/handle/10635/150284 | |
dc.description.abstract | Cross-species toxicogenomic studies provide valuable information in identifying core mechanisms underlying chemical toxicity cross-species, and insights into the mechanistic basis of species-specific responses. Using RNA-Seq, we compared the transcriptomic response in medaka and zebrafish livers on acute exposure to seven water pollutants to identify cross-species conserved response. Cross-species toxicity response was conserved most in PCB-126, followed by TDCPP, triclosan, BPA and cadmium. Atrazine and progesterone caused high species-specific responses. Baseline liver transcriptome analysis showed that medaka liver had higher baseline oxidoreductase activity, CYP2 expression and immunity factors than zebrafish, providing insights into the species-specific response. Cross-species conserved candidate biomarkers identified for PCB-126, cadmium and BPA exposures were validated in tilapia, and tested using degenerate primers in guppies for PCB-126. We found that cyp1b1, cyp1c2 and cyp1a were robust candidate universal teleost biomarkers for PCB-126 toxicity. This study demonstrates a strategy to identify universal fish biomarkers for predicting environmental contaminants. | |
dc.language.iso | en | |
dc.subject | Toxicogenomics, Comparative transcriptomics, Aquatic toxicology, Fish, Cross-species study, zebrafish, medaka | |
dc.type | Thesis | |
dc.contributor.department | BIOLOGICAL SCIENCES | |
dc.contributor.supervisor | Zhiyuan Gong | |
dc.description.degree | Ph.D | |
dc.description.degreeconferred | DOCTOR OF PHILOSOPHY (FOS) | |
Appears in Collections: | Ph.D Theses (Open) |
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AgrawalIRA.pdf | 6.12 MB | Adobe PDF | OPEN | None | View/Download |
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