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Please use this identifier to cite or link to this item: https://doi.org/10.1093/bioinformatics/btt254
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dc.titleA poor man's blastx-High-throughput metagenomic protein database search using pauda
dc.contributor.authorHuson, D.H.
dc.contributor.authorXie, C.
dc.date.accessioned2016-10-18T06:27:05Z
dc.date.available2016-10-18T06:27:05Z
dc.date.issued2014-01-01
dc.identifier.citationHuson, D.H., Xie, C. (2014-01-01). A poor man's blastx-High-throughput metagenomic protein database search using pauda. Bioinformatics 30 (1) : 38-39. ScholarBank@NUS Repository. https://doi.org/10.1093/bioinformatics/btt254
dc.identifier.issn13674803
dc.identifier.urihttp://scholarbank.nus.edu.sg/handle/10635/128504
dc.description.abstractSummary: In the context of metagenomics, we introduce a new approach to protein database search called PAUDA, which runs ∼10 000 times faster than BLASTX, while achieving about one-third of the assignment rate of reads to KEGG orthology groups, and producing gene and taxon abundance profiles that are highly correlated to those obtained with BLASTX. PAUDA requires
dc.sourceScopus
dc.typeArticle
dc.contributor.departmentLIFE SCIENCES INSTITUTE
dc.description.doi10.1093/bioinformatics/btt254
dc.description.sourcetitleBioinformatics
dc.description.volume30
dc.description.issue1
dc.description.page38-39
dc.description.codenBOINF
dc.identifier.isiut000329059700006
Appears in Collections:Staff Publications

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