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|Title:||A poor man's blastx-High-throughput metagenomic protein database search using pauda||Authors:||Huson, D.H.
|Issue Date:||1-Jan-2014||Citation:||Huson, D.H., Xie, C. (2014-01-01). A poor man's blastx-High-throughput metagenomic protein database search using pauda. Bioinformatics 30 (1) : 38-39. ScholarBank@NUS Repository. https://doi.org/10.1093/bioinformatics/btt254||Abstract:||Summary: In the context of metagenomics, we introduce a new approach to protein database search called PAUDA, which runs ∼10 000 times faster than BLASTX, while achieving about one-third of the assignment rate of reads to KEGG orthology groups, and producing gene and taxon abundance profiles that are highly correlated to those obtained with BLASTX. PAUDA requires||Source Title:||Bioinformatics||URI:||http://scholarbank.nus.edu.sg/handle/10635/128504||ISSN:||13674803||DOI:||10.1093/bioinformatics/btt254|
|Appears in Collections:||Staff Publications|
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