Please use this identifier to cite or link to this item: https://doi.org/10.1016/j.pbiomolbio.2011.06.002
Title: Considerations for the use of cellular electrophysiology models within cardiac tissue simulations
Authors: Cooper, J.
Corrias, A. 
Gavaghan, D.
Noble, D.
Keywords: Cardiac electrophysiology
CellML
Chaste
Model interfaces
Issue Date: Oct-2011
Source: Cooper, J., Corrias, A., Gavaghan, D., Noble, D. (2011-10). Considerations for the use of cellular electrophysiology models within cardiac tissue simulations. Progress in Biophysics and Molecular Biology 107 (1) : 74-80. ScholarBank@NUS Repository. https://doi.org/10.1016/j.pbiomolbio.2011.06.002
Abstract: The use of mathematical models to study cardiac electrophysiology has a long history, and numerous cellular scale models are now available, covering a range of species and cell types. Their use to study emergent properties in tissue is also widespread, typically using the monodomain or bidomain equations coupled to one or more cell models. Despite the relative maturity of this field, little has been written looking in detail at the interface between the cellular and tissue-level models. Mathematically this is relatively straightforward and well-defined. There are however many details and potential inconsistencies that need to be addressed, in order to ensure correct operation of a cellular model within a tissue simulation. This paper will describe these issues and how to address them.Simply having models available in a common format such as CellML is still of limited utility, with significant manual effort being required to integrate these models within a tissue simulation. We will thus also discuss the facilities available for automating this in a consistent fashion within Chaste, our robust and high-performance cardiac electrophysiology simulator.It will be seen that a common theme arising is the need to go beyond a representation of the model mathematics in a standard language, to include additional semantic information required in determining the model's interface, and hence to enhance interoperability. Such information can be added as metadata, but agreement is needed on the terms to use, including development of appropriate ontologies, if reliable automated use of CellML models is to become common. © 2011 Elsevier Ltd.
Source Title: Progress in Biophysics and Molecular Biology
URI: http://scholarbank.nus.edu.sg/handle/10635/68179
ISSN: 00796107
DOI: 10.1016/j.pbiomolbio.2011.06.002
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