Please use this identifier to cite or link to this item: http://scholarbank.nus.edu.sg/handle/10635/39225
Title: On half gapped seed.
Authors: Chen, W.
Sung, W.K. 
Issue Date: 2003
Source: Chen, W.,Sung, W.K. (2003). On half gapped seed.. Genome informatics series : proceedings of the . Workshop on Genome Informatics. Workshop on Genome Informatics 14 : 176-185. ScholarBank@NUS Repository.
Abstract: In this paper, we proposed a new type of seed for Blast-like homology search tools called "half seed''. This new seed is better than the "consecutive seed'' used by the original Blast tools in both sensitivity and efficiency. When compared with the "gapped seed'', which is proposed together with a new Blast-like searching tool, PatternHunter, this new seed offers a much wider range of choices for performing tradeoff between sensitivity and efficiency. This property is especially useful when some searching applications want to get more precise results with limitation on hardware resources, or vice versa.
Source Title: Genome informatics series : proceedings of the . Workshop on Genome Informatics. Workshop on Genome Informatics
URI: http://scholarbank.nus.edu.sg/handle/10635/39225
ISSN: 09199454
Appears in Collections:Staff Publications

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