Please use this identifier to cite or link to this item: https://doi.org/bioinformatics/btt254
Title: A poor man's blastx-High-throughput metagenomic protein database search using pauda
Authors: Huson, D.H.
Xie, C. 
Issue Date: 1-Jan-2014
Source: Huson, D.H., Xie, C. (2014-01-01). A poor man's blastx-High-throughput metagenomic protein database search using pauda. Bioinformatics 30 (1) : 38-39. ScholarBank@NUS Repository. https://doi.org/bioinformatics/btt254
Abstract: Summary: In the context of metagenomics, we introduce a new approach to protein database search called PAUDA, which runs ∼10 000 times faster than BLASTX, while achieving about one-third of the assignment rate of reads to KEGG orthology groups, and producing gene and taxon abundance profiles that are highly correlated to those obtained with BLASTX. PAUDA requires
Source Title: Bioinformatics
URI: http://scholarbank.nus.edu.sg/handle/10635/128504
ISSN: 13674803
DOI: bioinformatics/btt254
Appears in Collections:Staff Publications

Show full item record
Files in This Item:
There are no files associated with this item.

WEB OF SCIENCETM
Citations

23
checked on Jan 24, 2018

Page view(s)

9
checked on Feb 12, 2018

Google ScholarTM

Check

Altmetric


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.